Fading Coder

One Final Commit for the Last Sprint

Essential Linux Shell Commands Cheat Sheet

Hardware and Kernel Insigths uname -m # Display the system's CPU architecture uname -r # Output the active kernel release string dmidecode -q # Extract SMBIOS/DMI hardware component data hdparm -I /dev/sda # Retrieve detailed characteristics of a storage device hdparm -tT /dev/sda # Execute read-spe...

Managing Linux Shell Commands and Accessing Help Resources

Toggling and Managing Internal Commands Internal shell commands can be disabled or enabled dynamical. Use enable -n to turn off a built-in and enable to restore it. [root@localhost opt]# enable -n cd [root@localhost opt]# cd /mnt/ [root@localhost opt]# After disabling cd, the command no longer funct...

Essential Shell Scripting Tips and Tricks for Bioinformatics Workflows

Batch File Processing Example #!/bin/bash python preprocess_annotation.py -i wheat_annotation.gff3 -o wheat_annotation_filtered.gff4 base_fasta="wheat_transcripts.fasta" annotation_gff="wheat_annotation_filtered.gff4" motif_types=("G4" "C4" "A4" &quo...

Shell Command Patterns for System Administration

Automated Service Startup with Password Authentication The following expect script handles services requiring sudo access: #!/usr/bin/expect set timeout 5 spawn mysql.server start echo "MySQL service started successfully" spawn sh /opt/app/tomcat/bin/shutdown.sh spawn sh /opt/app/tomcat/bi...